PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G086000.1
Common NameB456_007G086000, LOC105802542
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 223aa    MW: 24918.9 Da    PI: 5.7271
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G086000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-20104154255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +ykGVr+++ +g ++AeIrdp++ng  +r++lg++ t+e+Aa a+++a+ k++g
  Gorai.007G086000.1 104 HYKGVRRRP-WGTYAAEIRDPKKNG--ARIWLGTYETPEDAALAYDRAAFKMRG 154
                         6********.***********9998..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.248104162IPR001471AP2/ERF domain
CDDcd000188.20E-31104164No hitNo description
PfamPF008475.2E-14104154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-31104163IPR001471AP2/ERF domain
SMARTSM003801.3E-37104168IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22104163IPR016177DNA-binding domain
PRINTSPR003672.3E-12105116IPR001471AP2/ERF domain
PRINTSPR003672.3E-12144164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MYCEATSDFD LRLLDSIRRH LLEDDDFETQ YPATFSENLA NVQLPITSAQ MGCSKTDAVA  60
INVDQWMTFD QLFDAAEAAA EVSFPSCEMS SKVDTPQTPP KKVHYKGVRR RPWGTYAAEI  120
RDPKKNGARI WLGTYETPED AALAYDRAAF KMRGSKAKLN FPHLIGSDQV QLVRLSNNKR  180
RSPEPCSPSS LSSMSDDGTP KSKRRISELG SDDIHQLMST EF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-31101169270ATERF1
2gcc_A2e-31101169270ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN0038090.0JN003809.1 Gossypium barbadense ethylene-responsive element-binding protein 6 (EREB6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012489697.11e-167PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ404791e-45ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A0D2SGJ91e-167A0A0D2SGJ9_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-41ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]